The role of disulfide bonds in a Solanum tuberosum saposin-like protein investigated using molecular dynamics | PLOS ONE
Dissecting Role of Charged Residue from Transmembrane Domain 5 of Latent Membrane Protein 1 via In Silico Simulations and Wet-Lab Experiments | The Journal of Physical Chemistry B
Root Mean Square Fluctuation. Per-residue root mean square fluctuation... | Download Scientific Diagram
YASARA Molecular Dynamics Trajectory Analysis for 4mbs
Computational drug repurposing strategy predicted peptide-based drugs that can potentially inhibit the interaction of SARS-CoV-2 spike protein with its target (humanACE2) | PLOS ONE
Computational drug repurposing strategy predicted peptide-based drugs that can potentially inhibit the interaction of SARS-CoV-2 spike protein with its target (humanACE2) | PLOS ONE
Heat map of the covariance matrix for fluctuations in MD calculated... | Download Scientific Diagram
Distance-Based Configurational Entropy of Proteins from Molecular Dynamics Simulations | PLOS ONE
Beginning Trajectory Analysis
A Computational Analysis of the Factors Governing the Dynamics of α7 nAChR and Its Homologs
Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails | Nature Communications
RMSD time plot. C-alpha root mean square deviation variation with... | Download Scientific Diagram
Fluctuations and Correlations in Crystalline Protein Dynamics: A Simulation Analysis of Staphylococcal Nuclease - ScienceDirect
AlphaFold2 models indicate that protein sequence determines both structure and dynamics | Scientific Reports
Residue Geometry Networks: A Rigidity-Based Approach to the Amino Acid Network and Evolutionary Rate Analysis | Scientific Reports
Detect regions of high mobility in a protein simulation. – AMBER-hub
Example for how to calculate the root mean square fluctuation (RMSF)... | Download Scientific Diagram
Comparison of residue fluctuation (root mean square fluctuation (RMSF))... | Download Scientific Diagram
Example for how to calculate the root mean square fluctuation (RMSF)... | Download Scientific Diagram
IJMS | Free Full-Text | Molecular Dynamics-Derived Pharmacophore Model Explaining the Nonselective Aspect of KV10.1 Pore Blockers | HTML
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Root Mean Square Fluctuation. Per-residue root mean square fluctuation... | Download Scientific Diagram
Detect regions of high mobility in a protein simulation. – AMBER-hub
Figure S3. Per-residue fluctuation of the b-factor during simulation... | Download Scientific Diagram
Residual Sum of Squares - Meaning, Formula, Examples, Calculate
IJMS | Free Full-Text | Conserved Conformational Hierarchy across Functionally Divergent Glycosyltransferases of the GT-B Structural Superfamily as Determined from Microsecond Molecular Dynamics | HTML
Docking studies and molecular dynamics simulations of the binding characteristics of waldiomycin and its methyl ester analog to Staphylococcus aureus histidine kinase | PLOS ONE
